Changelog

Source: NEWS.md

jazzPanda 0.2.0

Updated on November 16, 2024

To enhance interoperability with Bioconductor, the jazzPanda package has been updated to depend on the following data classes: SingleCellExperiment, SpatialExperiment, or SpatialFeatureExperiment.

Changes to the package include:

• Removed Function:
  • The convert_data() function has been removed from the export list.
• function get_vectors():
  • Input trans_lst is renamed to x.
  • Input cm_lst is removed.
  • x must be a SingleCellExperiment, SpatialExperiment, or SpatialFeatureExperiment object.
  • Renamed all_genes to test_genes to store genes for building spatial vectors.
• function compute_permp():
  • Input data is renamed to x.
  • n.cores is renamed to n_cores.
  • x must be a SingleCellExperiment, SpatialExperiment, or SpatialFeatureExperiment object.
• function create_genesets():
  • Input data_lst is renamed to x.
  • x must be a SingleCellExperiment, SpatialExperiment, or SpatialFeatureExperiment object.

jazzPanda 0.1.1

Updated on November 12, 2024

• Add the convert_data() function to expand interoperability with Bioconductor. Support input objects from SingleCellExperiment/SpatialExperimentSpatialFeatureExperiment class
• Modify one input type for function get_vectors(). Renamed input parameter data_lst as trans_lst specifically for storing transcript coordinates only.

jazzPanda 0.0.1

• This package is renamed as jazzPanda