helper function to check the inputs passed to create geneset function

helper function to check the inputs passed to create geneset function

Usage

check_geneset_input(data_lst, bin_type, bin_param, w_x, w_y, cluster_info)

Arguments

data_lst

A list of named matrices containing the coordinates of transcripts.

bin_type

A string indicating which bin shape is to be used for vectorization. One of "square" (default), "rectangle", or "hexagon".

bin_param

A numeric vector indicating the size of the bin. If the bin_type is "square" or "rectangle", this will be a vector of length two giving the numbers of rectangular quadrats in the x and y directions. If the bin_type is "hexagonal", this will be a number giving the side length of hexagons. Positive numbers only.

w_x

A numeric vector of length two specifying the x coordinate limits of enclosing box.

w_y

A numeric vector of length two specifying the y coordinate limits of enclosing box.

cluster_info

A dataframe/matrix containing the centroid coordinates, cluster sample label for each cell.The column names must include "x" (x coordinate), "y" (y coordinate), "cluster" (cluster label) and "sample" (sample).

Value

A list of two elements