helper function to check the input of binning
Arguments
- bin_param
A numeric vector indicating the size of the bin. If the
bin_type
is "square" or "rectangle", this will be a vector of length two giving the numbers of rectangular quadrats in the x and y directions. If thebin_type
is "hexagonal", this will be a number giving the side length of hexagons. Positive numbers only.For example:
c(3, 4)
means 3 bins along the x-axis and 4 bins along the y-axis (a 3 × 4 grid).c(5, 5)
means 5 bins along the x-axis and 5 bins along the y-axis (a 5 × 5 grid).
- bin_type
A string indicating which bin shape is to be used for vectorization. One of "square" (default), "rectangle", or "hexagon".
- range_list
A named list of spatial ranges for each sample. Each element should be a list with two components:
w_x
andw_y
, which are numeric vectors of length 2 specifying the x- and y-axis ranges (e.g., from cell or transcript coordinates). The range is calculated with 5 within the window.