Create spatial vectors for genes from transcript coordinates

This function will build gene vectors based on the transcript coordinates of every gene

Usage

get_gene_vectors_tr(
  data_lst,
  all_genes,
  bin_type,
  bin_param,
  bin_length,
  w_x,
  w_y
)

data_lst: A list of list. Every nested list refers to one sample, which must contain at least one matrix with transcript coordinates. Optional parameter.
all_genes: A vector of strings giving the name of the genes you want to test. This will be used as column names for one of the result matrix gene_mt.
bin_type: A string indicating which bin shape is to be used for vectorization. One of "square" (default), "rectangle", or "hexagon".
bin_param: A numeric vector indicating the size of the bin. If the bin_type is "square" or "rectangle", this will be a vector of length two giving the numbers of rectangular quadrats in the x and y directions. If the bin_type is "hexagonal", this will be a number giving the side length of hexagons. Positive numbers only.
bin_length: A positive integer giving the length of total bins
w_x: A numeric vector of length two specifying the x coordinate limits of enclosing box.
w_y: A numeric vector of length two specifying the y coordinate limits of enclosing box.

a matrix contains the transcript count in each grid. Each row refers to a grid, and each column refers to a gene.