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A SpatialExperiment object containing the coordinates for every transcript

Usage

data(rep1_sub)

Format

A SpatialExperiment object with 20 genes and 1713 cells. The molecules assay slot is a BumpyDataFrameMatrix obejct. Can retrieve DataFrame version by calling `BumpyMatrix::unsplitAsDataFrame(molecules(rep2_sub))`. The molecules assay contains 79576 rows and 3 variables:

x

x coordinates

y

y coordiantes

feature_name

transcript name

Source

<https://cf.10xgenomics.com/samples/xenium/1.0.1/ Xenium_FFPE_Human_Breast_Cancer_Rep1/ Xenium_FFPE_Human_Breast_Cancer_Rep1_outs.zip>

Value

SpatialExperiment