Last updated: 2022-06-03
Checks: 2 0
Knit directory: propeller-paper-analysis/
This reproducible R Markdown analysis was created with workflowr (version 1.7.0). The Checks tab describes the reproducibility checks that were applied when the results were created. The Past versions tab lists the development history.
Great! Since the R Markdown file has been committed to the Git repository, you know the exact version of the code that produced these results.
Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility.
The results in this page were generated with repository version 1cee71e. See the Past versions tab to see a history of the changes made to the R Markdown and HTML files.
Note that you need to be careful to ensure that all relevant files for
the analysis have been committed to Git prior to generating the results
(you can use wflow_publish or
wflow_git_commit). workflowr only checks the R Markdown
file, but you know if there are other scripts or data files that it
depends on. Below is the status of the Git repository when the results
were generated:
Ignored files:
Ignored: .Rhistory
Ignored: .Rproj.user/
Ignored: data/cold_warm_fresh_cellinfo.txt
Ignored: data/covid.cell.annotation.meta.txt
Ignored: data/heartFYA.Rds
Ignored: data/pool_1.rds
Untracked files:
Untracked: code/SimCode.R
Untracked: code/SimCodeTrueDiff.R
Untracked: code/auroc.R
Untracked: data/CTpropsTransposed.txt
Untracked: data/CelltypeLevels.csv
Untracked: data/TypeIErrTables.Rdata
Untracked: data/appnote1cdata.rdata
Untracked: data/cellinfo.csv
Untracked: data/nullsimsVaryN_results.Rdata
Untracked: data/sampleinfo.csv
Untracked: output/Fig1ab.pdf
Untracked: output/Fig1cde.pdf
Untracked: output/example_simdata.pdf
Untracked: output/fig2d.pdf
Untracked: output/legend-fig2d.pdf
Untracked: output/typeIerrorResults.Rda
Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.
These are the previous versions of the repository in which changes were
made to the R Markdown (analysis/index.Rmd) and HTML
(docs/index.html) files. If you’ve configured a remote Git
repository (see ?wflow_git_remote), click on the hyperlinks
in the table below to view the files as they were in that past version.
| File | Version | Author | Date | Message |
|---|---|---|---|---|
| Rmd | 1cee71e | bphipson | 2022-06-03 | update index |
| html | 13ac03d | bphipson | 2022-06-03 | Build site. |
| Rmd | 5d648b4 | bphipson | 2022-06-03 | update index |
| html | fd5ed57 | bphipson | 2022-06-03 | Build site. |
| Rmd | 3e89ca4 | bphipson | 2022-06-03 | update index |
| html | 4cccda8 | bphipson | 2022-06-03 | Build site. |
| Rmd | 66841a4 | bphipson | 2022-06-03 | update index |
| html | a39985a | bphipson | 2022-06-03 | Build site. |
| Rmd | cf6f450 | bphipson | 2022-06-03 | add real data analysis |
| html | 67456c7 | bphipson | 2022-06-03 | Build site. |
| Rmd | b239441 | bphipson | 2022-06-03 | update simulations |
| html | 2313cc7 | bphipson | 2022-06-01 | Build site. |
| Rmd | 7ec7a76 | bphipson | 2022-06-01 | Add null simulation results and true difference simulation results |
| Rmd | 3a453fb | bphipson | 2022-06-01 | add null simulation results |
| html | 4ff85db | bphipson | 2022-06-01 | Build site. |
| Rmd | 96819c1 | bphipson | 2022-06-01 | add license and about information |
| html | 20455e3 | bphipson | 2022-06-01 | Build site. |
| Rmd | ee88aa1 | bphipson | 2022-06-01 | Add my first analysis |
| Rmd | ef58c73 | bphipson | 2022-05-31 | Start workflowr project. |
The website hosts the analysis and evaluation of different statistical methods for determining differences in cell type proportions in single cell RNA-seq data.
Citation: Phipson, B, et al., Oshlack, A (2021). propeller: testing for differences in cell type proportions in single cell data. bioRxiv.